Towards an End-to-End Explainable Diet Recommendation System
Year 2 Research Project

Towards an End-to-End Explainable Diet Recommendation System

Description

SIGNIFICANCE

As a whole, the impact of this work will be to (a) accelerate knowledge discovery and applications around health and nutrition by creating the necessary infrastructure (databases, algorithms, software packages, benchmarks), (b) demonstrate that an end-to-end diet recommendation system is possible and create a first proof-of-concept implementation that can be refined and adopted in the future, which in turn will add in our tool arsenal for a healthier society through better food choices.

GOALS

The specific aims are (a) create the necessary components for a diet recommendation system (aim 1), (b) integrate these components to a DRS system and evaluate its performance, including explainability (aim 2), (c) fine-tune and design the next generation DRS for Y3 (aim 3).

Team

Portrait of Ilias Tagkopoulos

Ilias Tagkopoulos

Principal Investigator

Portrait of Danielle Lemay

Danielle Lemay

Co Principal Investigator

Portrait of Zhaodan Kong

Zhaodan Kong

Co Principal Investigator

Portrait of Xin Liu

Xin Liu

Co Principal Investigator

Publications

Journal Article · Nutrients · 2022

The Development of the Davis Food Glycopedia—A Glycan Encyclopedia of Food

Castillo, Juan J, Garret Couture, Nikita P Bacalzo, Ye Chen, Elizabeth L Chin, Sarah E Blecksmith, Yasmine Y Bouzid, Yael Vainberg, Chad Masarweh, Qing Zhao, Jennifer T Smilowitz, Bruce German, David A Mills, Danielle G Lemay, and Carlito B Lebrilla

Paper page for The Development of the Davis Food Glycopedia—A Glycan Encyclopedia of FoodDOI 10.3390/nu14081639

Journal Article · Journal of Agricultural and Food Chemistry · 2022

Chardonnay Marc As a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory Benefits

Holt, Roberta R, Daniela Barile, Selina C Wang, John P Munafo, Torey Arvik, Xueqi Li, Fanny Lee, Carl L Keen, Ilias Tagkopoulos, and Harold H Schmitz

Paper page for Chardonnay Marc as a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory BenefitsProject for Chardonnay Marc as a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory BenefitsDOI 10.1021/acs.jafc.2c04519

Journal Article · Scientific Reports · 2022

An Early Prediction Model for Canine Chronic Kidney Disease Based on Routine Clinical Laboratory Tests

Kokkinos, Yiannis, JoAnn Morrison, Richard Bradley, Theodoros Panagiotakos, Jennifer Ogeer, Dennis Chew, Ciaran O'Flynn, Geert D Meyer, Philip Watson, and Ilias Tagkopoulos

Paper page for An early prediction model for canine chronic kidney disease based on routine clinical laboratory testsProject for An early prediction model for canine chronic kidney disease based on routine clinical laboratory testsDOI 10.1038/s41598-022-18793-6

Journal Article · Computational and Structural Biotechnology Journal · 2022

A Computational Algorithm to Assess the Physiochemical Determinants of T Cell Receptor Dissociation Kinetics

Rollins, Zachary A, Jun Huang, Ilias Tagkopoulos, Roland Faller, and Steven C George

Paper page for A computational algorithm to assess the physiochemical determinants of T cell receptor dissociation kineticsProject for A computational algorithm to assess the physiochemical determinants of T cell receptor dissociation kineticsDOI 10.1016/j.csbj.2022.06.048

FeaturedJournal Article · Nature Communications · 2022

Knowledge Integration and Decision Support for Accelerated Discovery of Antibiotic Resistance Genes

Youn, Jason, Navneet Rai, and Ilias Tagkopoulos

Paper page for Knowledge integration and decision support for accelerated discovery of antibiotic resistance genesGitHub repository for Knowledge integration and decision support for accelerated discovery of antibiotic resistance genesProject for Knowledge integration and decision support for accelerated discovery of antibiotic resistance genesDOI 10.1038/s41467-022-29993-z

Journal Article · Computers and Electronics in Agriculture · 2022

Special Report: AI Institute for Next Generation Food Systems (AIFS)

Tagkopoulos, Ilias, Steve Brown, Xin Liu, Qing Zhao, Tarek I Zohdi, Mason Earles, Nitin Nitin, Daniel Runcie, Danielle G Lemay, Aaron Smith, Pamela Ronald, Hao Feng, and Gabriel Youtsey

Paper page for Special report: AI Institute for next generation food systems (AIFS)Project for Special report: AI Institute for next generation food systems (AIFS)DOI 10.1016/j.compag.2022.106819

Journal Article · The Journal of Nutrition · 2023

Dietary Intake of Monosaccharides From Foods Is Associated with Characteristics of the Gut Microbiota and Gastrointestinal Inflammation in Healthy US Adults

Larke, Jules A, Nikita P Bacalzo, Juan J Castillo, Garret Couture, Ye Chen, Zhengyao Xue, Zeynep Alkan, Mary E Kable, Carlito B Lebrilla, Charles B Stephensen, and Danielle G Lemay

Paper page for Dietary Intake of Monosaccharides from Foods is Associated with Characteristics of the Gut Microbiota and Gastrointestinal Inflammation in Healthy US AdultsDOI 10.1016/j.tjnut.2022.12.008