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Year 2 Research Project
Towards an End-to-End Explainable Diet Recommendation System

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Description

SIGNIFICANCE

As a whole, the impact of this work will be to (a) accelerate knowledge discovery and applications around health and nutrition by creating the necessary infrastructure (databases, algorithms, software packages, benchmarks), (b) demonstrate that an end-to-end diet recommendation system is possible and create a first proof-of-concept implementation that can be refined and adopted in the future, which in turn will add in our tool arsenal for a healthier society through better food choices.

GOALS

The specific aims are (a) create the necessary components for a diet recommendation system (aim 1), (b) integrate these components to a DRS system and evaluate its performance, including explainability (aim 2), (c) fine-tune and design the next generation DRS for Y3 (aim 3).

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Team

Portrait of Ilias Tagkopoulos

Ilias Tagkopoulos

Principal Investigator

Portrait of Danielle Lemay

Danielle Lemay

Co Principal Investigator

Portrait of Zhaodan Kong

Zhaodan Kong

Co Principal Investigator

Portrait of Xin Liu

Xin Liu

Co Principal Investigator

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Publications

A thumbnail of the journal or conference cover of The Development of the Davis Food Glycopedia—A Glycan Encyclopedia of Food
Journal Article ⏐ Nutrients 2022

The Development of the Davis Food Glycopedia—A Glycan Encyclopedia of Food

Castillo, Juan J,Garret Couture,Nikita P Bacalzo,Ye Chen,Elizabeth L Chin,Sarah E Blecksmith,Yasmine Y Bouzid,Yael Vainberg,Chad Masarweh,Qing Zhao,Jennifer T Smilowitz,Bruce German,David A Mills,Danielle G Lemay,and Carlito B Lebrilla
DOI: 10.3390/nu14081639
A thumbnail of the journal or conference cover of Chardonnay Marc as a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory Benefits
Journal Article ⏐ J. Agric. Food Chem. 2022

Chardonnay Marc As a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory Benefits

Holt, Roberta R,Daniela Barile,Selina C Wang,John P Munafo,Torey Arvik,Xueqi Li,Fanny Lee,Carl L Keen,Ilias Tagkopoulos,and Harold H Schmitz
DOI: 10.1021/acs.jafc.2c04519
A thumbnail of the journal or conference cover of Algorithmic lifestyle optimization
Journal Article ⏐ JAMIA 2022

Algorithmic Lifestyle Optimization

Eetemadi, Ameen,and Ilias Tagkopoulos
DOI: 10.1093/jamia/ocac186
A thumbnail of the journal or conference cover of An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
Journal Article ⏐ Sci. Rep. 2022

An Early Prediction Model for Canine Chronic Kidney Disease Based on Routine Clinical Laboratory Tests

Kokkinos, Yiannis,JoAnn Morrison,Richard Bradley,Theodoros Panagiotakos,Jennifer Ogeer,Dennis Chew,Ciaran O'Flynn,Geert D Meyer,Philip Watson,and Ilias Tagkopoulos
DOI: 10.1038/s41598-022-18793-6
A thumbnail of the journal or conference cover of A computational algorithm to assess the physiochemical determinants of T cell receptor dissociation kinetics
Journal Article ⏐ Comput. Struct. Biotechnol. J. 2022

A Computational Algorithm to Assess the Physiochemical Determinants of T Cell Receptor Dissociation Kinetics

Rollins, Zachary A,Jun Huang,Ilias Tagkopoulos,Roland Faller,and Steven C George
DOI: 10.1016/j.csbj.2022.06.048
A thumbnail of the journal or conference cover of Understanding the Formation and Mechanism of Anticipatory Responses in Escherichia coli
Journal Article ⏐ Int. J. Mol. Sci. 2022

Understanding the Formation and Mechanism of Anticipatory Responses in Escherichia Coli

Rai, Navneet,Minseung Kim,and Ilias Tagkopoulos
DOI: 10.3390/ijms23115985
A thumbnail of the journal or conference cover of Knowledge integration and decision support for accelerated discovery of antibiotic resistance genes
Journal Article ⏐ Nat. Commun. 2022

Knowledge Integration and Decision Support for Accelerated Discovery of Antibiotic Resistance Genes

DOI: 10.1038/s41467-022-29993-z
A thumbnail of the journal or conference cover of Special report: AI Institute for next generation food systems (AIFS)
Journal Article ⏐ Comput. Electron. Agric. 2022

Special Report: AI Institute for Next Generation Food Systems (AIFS)

DOI: 10.1016/j.compag.2022.106819
A thumbnail of the journal or conference cover of Constrained Reinforcement Learning for Autonomous Farming: Challenges and Opportunities
Workshop Article ⏐ AAAI Workshop AI Agric. Food Syst. 2023

Constrained Reinforcement Learning for Autonomous Farming: Challenges and Opportunities

A thumbnail of the journal or conference cover of Dietary Intake of Monosaccharides from Foods is Associated with Characteristics of the Gut Microbiota and Gastrointestinal Inflammation in Healthy US Adults
Journal Article ⏐ J. Nutr. 2023

Dietary Intake of Monosaccharides From Foods Is Associated with Characteristics of the Gut Microbiota and Gastrointestinal Inflammation in Healthy US Adults

Larke, Jules A,Nikita P Bacalzo,Juan J Castillo,Garret Couture,Ye Chen,Zhengyao Xue,Zeynep Alkan,Mary E Kable,Carlito B Lebrilla,Charles B Stephensen,and Danielle G Lemay
DOI: 10.1016/j.tjnut.2022.12.008
A thumbnail of the journal or conference cover of Causal explanation for reinforcement learning: quantifying state and temporal importance
Journal Article ⏐ APIN 2023

Causal Explanation for Reinforcement Learning: Quantifying State and Temporal Importance

DOI: 10.1007/s10489-023-04649-7
A thumbnail of the journal or conference cover of Quantifying Causal Path-Specific Importance in Structural Causal Model
Journal Article ⏐ Computation 2023

Quantifying Causal Path-Specific Importance in Structural Causal Model

DOI: 10.3390/computation11070133