Portrait of Ilias Tagkopoulos
Leadership

Ilias Tagkopoulos

Professor of Computer Science and the Genome Center, UC Davis

Director and Principal Investigator

Ilias is a Computer Science Professor at UC Davis, leading the Integrative Biology and Predictive Analytics lab. He also serves as the Director AIFS, the USDA-NIFA/NSF Artificial Intelligence Institute for Next Generation Food Systems.

With experience in advising and founding companies, particularly in AI for Life Sciences, his focus lies in data integration, modeling, experimental design, and decision-making under uncertainty, with practical applications in clinical and nutrition data.

Recognized for his contributions, he received the NSF CAREER award in 2013. Ilias holds a Master of Science degree from Columbia University (2003) and a Ph.D. in Electrical Engineering from Princeton University (2008).

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AIFS Publications

  • A thumbnail of the journal or conference cover of Special report: AI Institute for next generation food systems (AIFS)
    Journal Article ⏐ Comput. Electron. Agric. 2022

    Special Report: AI Institute for Next Generation Food Systems (AIFS)

    DOI: 10.1016/j.compag.2022.106819
  • A thumbnail of the journal or conference cover of Knowledge integration and decision support for accelerated discovery of antibiotic resistance genes
    Journal Article ⏐ Nat. Commun. 2022

    Knowledge Integration and Decision Support for Accelerated Discovery of Antibiotic Resistance Genes

    DOI: 10.1038/s41467-022-29993-z
  • A thumbnail of the journal or conference cover of White Paper: Artificial Intelligence for Food and Health
    Workshop Article ⏐ AI for Food and Health Workshop 2024

    White Paper: Artificial Intelligence for Food and Health

  • A thumbnail of the journal or conference cover of Methane and fatty acid metabolism pathways are predictive of Low-FODMAP diet efficacy for patients with irritable bowel syndrome
    Journal Article ⏐ Clin. Nutr. 2021

    Methane and Fatty Acid Metabolism Pathways Are Predictive of Low-FODMAP Diet Efficacy for Patients with Irritable Bowel Syndrome

    Eetemadi, Ameen,and Ilias Tagkopoulos
    DOI: 10.1016/j.clnu.2020.12.041
  • A thumbnail of the journal or conference cover of An early prediction model for canine chronic kidney disease based on routine clinical laboratory tests
    Journal Article ⏐ Sci. Rep. 2022

    An Early Prediction Model for Canine Chronic Kidney Disease Based on Routine Clinical Laboratory Tests

    Kokkinos, Yiannis,JoAnn Morrison,Richard Bradley,Theodoros Panagiotakos,Jennifer Ogeer,Dennis Chew,Ciaran O'Flynn,Geert D Meyer,Philip Watson,and Ilias Tagkopoulos
    DOI: 10.1038/s41598-022-18793-6
  • A thumbnail of the journal or conference cover of A computational algorithm to assess the physiochemical determinants of T cell receptor dissociation kinetics
    Journal Article ⏐ Comput. Struct. Biotechnol. J. 2022

    A Computational Algorithm to Assess the Physiochemical Determinants of T Cell Receptor Dissociation Kinetics

    Rollins, Zachary A,Jun Huang,Ilias Tagkopoulos,Roland Faller,and Steven C George
    DOI: 10.1016/j.csbj.2022.06.048
  • A thumbnail of the journal or conference cover of Preliminary Techno-Economic Assessment of Animal Cell-Based Meat
    Journal Article ⏐ Foods 2020

    Preliminary Techno-Economic Assessment of Animal Cell-Based Meat

    Risner, Derrick,Fangzhou Li,Jason S Fell,Sara A Pace,Justin Siegel,Ilias Tagkopoulos,and Edward S Spang
    DOI: 10.3390/foods10010003
  • A thumbnail of the journal or conference cover of FoodAtlas: Automated knowledge extraction of food and chemicals from literature
    Journal Article ⏐ Comput. Biol. Med. 2024

    FoodAtlas: Automated Knowledge Extraction of Food and Chemicals From Literature

    DOI: https://doi.org/10.1016/j.compbiomed.2024.109072
  • A thumbnail of the journal or conference cover of Algorithmic lifestyle optimization
    Journal Article ⏐ JAMIA 2022

    Algorithmic Lifestyle Optimization

    Eetemadi, Ameen,and Ilias Tagkopoulos
    DOI: 10.1093/jamia/ocac186
  • A thumbnail of the journal or conference cover of Understanding the Formation and Mechanism of Anticipatory Responses in Escherichia coli
    Journal Article ⏐ Int. J. Mol. Sci. 2022

    Understanding the Formation and Mechanism of Anticipatory Responses in Escherichia Coli

    Rai, Navneet,Minseung Kim,and Ilias Tagkopoulos
    DOI: 10.3390/ijms23115985
  • A thumbnail of the journal or conference cover of Using Word Embeddings to Learn a Better Food Ontology
    Journal Article ⏐ Front. Artif. Intell. 2020

    Using Word Embeddings to Learn a Better Food Ontology

    Youn, Jason,Tarini Naravane,and Ilias Tagkopoulos
    DOI: 10.3389/frai.2020.584784
  • A thumbnail of the journal or conference cover of Chardonnay Marc as a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory Benefits
    Journal Article ⏐ J. Agric. Food Chem. 2022

    Chardonnay Marc As a New Model for Upcycled Co-products in the Food Industry: Concentration of Diverse Natural Products Chemistry for Consumer Health and Sensory Benefits

    Holt, Roberta R,Daniela Barile,Selina C Wang,John P Munafo,Torey Arvik,Xueqi Li,Fanny Lee,Carl L Keen,Ilias Tagkopoulos,and Harold H Schmitz
    DOI: 10.1021/acs.jafc.2c04519